PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT21589
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 344aa    MW: 37941.7 Da    PI: 7.2649
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT21589genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.35.5e-4881343128
       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvg 101
               pGfrFhPt+eel+ +yL + + gkkl++ ++i +++iy+++PwdLp ++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++ s+   ++++g
  EMT21589   8 PGFRFHPTEEELLGFYLSRVALGKKLHF-DIIGTLNIYRHDPWDLPGMAKIGEREWYFFVPRDRKAGSGGRPNRTTERGFWKATGSDRAIRSTadPKRVIG 107
               9*************************99.99***************888999***************************************98777788** PP

       NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
               lkktLvfy+grap+g+ktdWvm+eyrl
  EMT21589 108 LKKTLVFYQGRAPRGTKTDWVMNEYRL 134
               *************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.036154IPR003441NAC domain
SuperFamilySSF1019411.1E-577154IPR003441NAC domain
PfamPF023652.3E-248134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEGDQDLPGF RFHPTEEELL GFYLSRVALG KKLHFDIIGT LNIYRHDPWD LPGMAKIGER  60
EWYFFVPRDR KAGSGGRPNR TTERGFWKAT GSDRAIRSTA DPKRVIGLKK TLVFYQGRAP  120
RGTKTDWVMN EYRLPDNGAP PPQEDTVLCK VYRKATPLKE LEQRAFEIEE MKQRSGSNGG  180
YGYSGAARAC PAACDFYLSP SDDVQDNFLI PSSSSSSSTA PSDNSSSHDA DAPRIAKKEA  240
DVAMVTVAST SSLPQAANAP FHLQLPAVNP PCGLQLPAAN HGMSNMSSLQ LPAASQGVVD  300
LPSLQLPAAS SHRVFDWLND PFLTQLRSPW QDTHCMSPYA HLLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swp_D1e-47815622170NAC domain-containing protein 19
3swp_C1e-47815622170NAC domain-containing protein 19
3swp_B1e-47815622170NAC domain-containing protein 19
3swp_A1e-47815622170NAC domain-containing protein 19
3swm_D1e-47815622170NAC domain-containing protein 19
3swm_C1e-47815622170NAC domain-containing protein 19
3swm_B1e-47815622170NAC domain-containing protein 19
3swm_A1e-47815622170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3673760.0AK367376.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2055P15.
GenBankAK3679630.0AK367963.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2065K10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690518.11e-155PREDICTED: NAC domain-containing protein 67 isoform X2
TrEMBLM8BHY30.0M8BHY3_AEGTA; Putative NAC domain-containing protein 94
STRINGMLOC_65456.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP177038105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.14e-87NAC domain containing protein 36